Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
GAT86048.1Flp pilus assembly protein, ATPase CpaF. (139 aa)    
Predicted Functional Partners:
GAT86064.1
Flp pilus assembly protein, ATPase CpaF.
 
     0.976
GAT86065.1
Type II secretion system protein F.
  
 0.918
GAT85785.1
Secretion system protein.
 
  
 0.881
GAT86066.1
Type II secretion system protein F.
 
  
 0.864
GAT85786.1
Type II secretion system protein F.
 
  
 0.861
GAT86068.1
Pilus biosynthesis protein TadE.
 
    0.713
GAT86026.1
Hypothetical protein.
 
    0.684
GAT86025.1
Hypothetical protein.
 
    0.634
GAT85788.1
Pilus biosynthesis protein CpaE.
 
  
 0.618
GAT86049.1
Hypothetical protein.
       0.584
Your Current Organism:
Paenarthrobacter nicotinovorans
NCBI taxonomy Id: 29320
Other names: ATCC 49919, Arthrobacter nicotinivorans, Arthrobacter nicotinovorans, Arthrobacter oxydans DSM 420, CIP 106990, DSM 420, IFO 15511, JCM 3874, LMG 16253, LMG:16253, NBRC 15511, P. nicotinovorans
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