Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
GAT86223.1ABC transporter. (251 aa)    
Predicted Functional Partners:
GAT87228.1
ABC transporter substrate-binding protein.
  
  0.905
GAT86222.1
Cell division protein FtsX.
  
  0.904
GAT86225.1
Cell division protein FtsX.
  
  0.836
GAT86534.1
Multidrug ABC transporter substrate-binding protein.
 
  0.828
GAT87998.1
Permease.
 
 
0.812
GAT88325.1
Hypothetical protein.
  
 0.767
GAT86740.1
Hypothetical protein; Belongs to the ABC transporter superfamily. Macrolide exporter (TC 3.A.1.122) family.
 
0.763
GAT87793.1
Hypothetical protein M707_21210; Belongs to the ABC transporter superfamily. Macrolide exporter (TC 3.A.1.122) family.
 
0.748
GAT87389.1
ABC transporter.
  
  
 
0.739
GAT88134.1
ABC transporter.
     
  0.723
Your Current Organism:
Paenarthrobacter nicotinovorans
NCBI taxonomy Id: 29320
Other names: ATCC 49919, Arthrobacter nicotinivorans, Arthrobacter nicotinovorans, Arthrobacter oxydans DSM 420, CIP 106990, DSM 420, IFO 15511, JCM 3874, LMG 16253, LMG:16253, NBRC 15511, P. nicotinovorans
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