Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GAT86272.1ABC transporter ATP-binding protein. (307 aa)    
Predicted Functional Partners:
GAT86271.1
Hypothetical protein.
 
 
  0.973
GAT86178.1
ABC transporter.
 
  
 
0.917
GAT86270.1
Hypothetical protein.
     0.916
GAT86147.1
ABC transporter.
 
    
0.906
GAT86269.1
Hypothetical protein.
 
     0.897
GAT86473.1
Branched-chain amino acid ABC transporter ATP-binding protein.
 
   
 
0.840
GAT88466.1
Polar amino acid ABC transporter inner membrane protein.
   
  0.755
GAT89301.1
Sugar ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
 
  
 
0.708
GAT88467.1
Hypothetical protein.
    
  0.689
GAT87389.1
ABC transporter.
    
  0.688
Your Current Organism:
Paenarthrobacter nicotinovorans
NCBI taxonomy Id: 29320
Other names: ATCC 49919, Arthrobacter nicotinivorans, Arthrobacter nicotinovorans, Arthrobacter oxydans DSM 420, CIP 106990, DSM 420, IFO 15511, JCM 3874, LMG 16253, LMG:16253, NBRC 15511, P. nicotinovorans
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