Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
GAT86294.1CAAX amino protease. (256 aa)    
Predicted Functional Partners:
GAT87152.1
Hypothetical protein.
  
  
 0.734
GAT88331.1
Hypothetical protein.
  
  
 0.734
GAT88569.1
Membrane protein.
 
    0.728
GAT86295.1
Histidine phosphatase; Belongs to the phosphoglycerate mutase family.
  
    0.578
GAT87151.1
Hypothetical protein, partial.
  
  
 0.528
GAT88787.1
Malonic semialdehyde reductase.
  
  
 0.528
GAT85694.1
Hypothetical protein; Belongs to the UPF0336 family.
  
     0.518
GAT88999.1
PucR family transcriptional regulator.
  
     0.469
GAT86513.1
ABC transporter.
   
    0.439
GAT86742.1
ABC transporter.
   
    0.439
Your Current Organism:
Paenarthrobacter nicotinovorans
NCBI taxonomy Id: 29320
Other names: ATCC 49919, Arthrobacter nicotinivorans, Arthrobacter nicotinovorans, Arthrobacter oxydans DSM 420, CIP 106990, DSM 420, IFO 15511, JCM 3874, LMG 16253, LMG:16253, NBRC 15511, P. nicotinovorans
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