Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GAT85435.1Hypothetical protein. (134 aa)    
Predicted Functional Partners:
GAT88116.1
Peptidase S41; Degrades oligopeptides; Belongs to the peptidase S41B family.
   
  0.633
GAT85436.1
Hypothetical protein.
       0.536
GAT89321.1
Hypothetical protein.
     
  0.513
GAT86031.1
Cell division protein FtsK.
    
 
 0.478
GAT86331.1
Cell division protein FtsK.
    
 
 0.478
GAT85486.1
Histidine kinase.
   
 
 0.458
GAT88565.1
Cell division protein FtsK; Belongs to the FtsK/SpoIIIE/SftA family.
    
   0.456
GAT86074.1
Peptidase M23.
   
 
 0.440
GAT87799.1
Hypothetical protein.
    
   0.429
GAT85379.1
Hypothetical protein.
    
   0.429
Your Current Organism:
Paenarthrobacter nicotinovorans
NCBI taxonomy Id: 29320
Other names: ATCC 49919, Arthrobacter nicotinivorans, Arthrobacter nicotinovorans, Arthrobacter oxydans DSM 420, CIP 106990, DSM 420, IFO 15511, JCM 3874, LMG 16253, LMG:16253, NBRC 15511, P. nicotinovorans
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