STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAT86309.1LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (305 aa)    
Predicted Functional Partners:
GAT85868.1
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.555
tdh
L-threonine 3-dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of L-threonine to 2- amino-3-ketobutyrate; Belongs to the zinc-containing alcohol dehydrogenase family.
       0.542
GAT89413.1
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.494
GAT89357.1
Hypothetical protein; Belongs to the LysR transcriptional regulatory family.
  
     0.493
GAT85987.1
Hypothetical protein; Belongs to the LysR transcriptional regulatory family.
  
     0.491
GAT87130.1
(p)ppGpp synthetase.
  
     0.490
GAT86660.1
Hypothetical protein; Belongs to the LysR transcriptional regulatory family.
  
     0.464
GAT86598.1
Hypothetical protein; Belongs to the LysR transcriptional regulatory family.
  
     0.445
GAT89107.1
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.440
kbl
2-amino-3-ketobutyrate CoA ligase; Catalyzes the cleavage of 2-amino-3-ketobutyrate to glycine and acetyl-CoA.
       0.423
Your Current Organism:
Paenarthrobacter nicotinovorans
NCBI taxonomy Id: 29320
Other names: ATCC 49919, Arthrobacter nicotinivorans, Arthrobacter nicotinovorans, Arthrobacter oxydans DSM 420, CIP 106990, DSM 420, IFO 15511, JCM 3874, LMG 16253, LMG:16253, NBRC 15511, P. nicotinovorans
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