STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KKO84149.1Dihydroxyacetone kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (509 aa)    
Predicted Functional Partners:
KKO83064.1
DegV domain-containing protein Cgl2349/cg2579; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.958
recG
ATP-dependent DNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.902
ung
uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine.
       0.828
thiL
Thiamine monophosphate kinase; Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1; Belongs to the thiamine-monophosphate kinase family.
       0.828
KKO84152.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.679
coaD
Phosphopantetheine adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.
       0.678
KKO84147.1
DNA methylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.678
KKO83869.1
Stress protein, Gls24 family; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.438
pknB
Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.414
Your Current Organism:
Corynebacterium otitidis
NCBI taxonomy Id: 29321
Other names: ATCC 51513, C. otitidis, CCUG 32254, CDC coryneform group ANF-1 like, CIP 104075, DSM 8821, JCM 12146, LMG 19071, LMG:19071, Turicella otitidis, strain 234/92
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