OAH56165.1 protein (Domibacillus aminovorans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

OAH56165.1

Ammonium transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (434 aa)

Predicted Functional Partners:

OAH56319.1

0.998

OAH53133.1

0.879

OAH59722.1

0.787

OAH59697.1

0.620

OAH58615.1

0.596

OAH53134.1

0.580

OAH59667.1

0.507

OAH57883.1

0.486

cinA

0.453

guaA

0.442

Your Current Organism:

Domibacillus aminovorans

NCBI taxonomy Id: 29332
Other names: Bacillus aminovorans, D. aminovorans, LMG 16796, LMG:16796

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OAH53133.1	OAH53134.1	AWH48_12315	AWH48_12320	Glutamate synthase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
OAH53133.1	OAH56165.1	AWH48_12315	AWH48_05695	Glutamate synthase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ammonium transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.879
OAH53133.1	OAH56319.1	AWH48_12315	AWH48_05700	Glutamate synthase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the P(II) protein family.	0.692
OAH53133.1	OAH57883.1	AWH48_12315	AWH48_02410	Glutamate synthase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aconitate hydratase; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.	0.672
OAH53133.1	OAH58615.1	AWH48_12315	AWH48_16560	Glutamate synthase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.656
OAH53133.1	OAH59722.1	AWH48_12315	AWH48_00980	Glutamate synthase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.546
OAH53133.1	guaA	AWH48_12315	AWH48_13100	Glutamate synthase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	GMP synthetase; Catalyzes the synthesis of GMP from XMP.	0.916
OAH53134.1	OAH53133.1	AWH48_12320	AWH48_12315	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamate synthase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
OAH53134.1	OAH56165.1	AWH48_12320	AWH48_05695	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ammonium transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.580
OAH53134.1	OAH58615.1	AWH48_12320	AWH48_16560	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.565
OAH56165.1	OAH53133.1	AWH48_05695	AWH48_12315	Ammonium transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamate synthase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.879
OAH56165.1	OAH53134.1	AWH48_05695	AWH48_12320	Ammonium transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.580
OAH56165.1	OAH56319.1	AWH48_05695	AWH48_05700	Ammonium transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the P(II) protein family.	0.998
OAH56165.1	OAH57883.1	AWH48_05695	AWH48_02410	Ammonium transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aconitate hydratase; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.	0.486
OAH56165.1	OAH58615.1	AWH48_05695	AWH48_16560	Ammonium transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.596
OAH56165.1	OAH59667.1	AWH48_05695	AWH48_00750	Ammonium transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.507
OAH56165.1	OAH59697.1	AWH48_05695	AWH48_00900	Ammonium transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	PAS domain S-box protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.620
OAH56165.1	OAH59722.1	AWH48_05695	AWH48_00980	Ammonium transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.787
OAH56165.1	cinA	AWH48_05695	AWH48_11140	Ammonium transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Competence/damage-inducible protein A; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CinA family.	0.453
OAH56165.1	guaA	AWH48_05695	AWH48_13100	Ammonium transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	GMP synthetase; Catalyzes the synthesis of GMP from XMP.	0.442