OAH54543.1 protein (Domibacillus aminovorans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

OAH54543.1

Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (284 aa)

Predicted Functional Partners:

OAH53590.1

0.904

OAH53657.1

0.904

ftsH

0.883

OAH53809.1

0.742

OAH53817.1

0.742

OAH53818.1

0.742

OAH55855.1

0.727

OAH53200.1

0.712

OAH53620.1

0.704

OAH56014.1

0.635

Your Current Organism:

Domibacillus aminovorans

NCBI taxonomy Id: 29332
Other names: Bacillus aminovorans, D. aminovorans, LMG 16796, LMG:16796

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OAH53200.1	OAH54543.1	AWH48_12655	AWH48_08085	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.712
OAH53590.1	OAH53657.1	AWH48_09905	AWH48_10255	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome B; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).	0.678
OAH53590.1	OAH54543.1	AWH48_09905	AWH48_08085	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.904
OAH53620.1	OAH54543.1	AWH48_10055	AWH48_08085	Chemotaxis protein CheV; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.704
OAH53657.1	OAH53590.1	AWH48_10255	AWH48_09905	Cytochrome B; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.678
OAH53657.1	OAH53809.1	AWH48_10255	AWH48_11060	Cytochrome B; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).	Zinc protease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase M16 family.	0.991
OAH53657.1	OAH53817.1	AWH48_10255	AWH48_11105	Cytochrome B; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).	Zinc protease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.991
OAH53657.1	OAH53818.1	AWH48_10255	AWH48_11110	Cytochrome B; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).	Zinc protease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.991
OAH53657.1	OAH54543.1	AWH48_10255	AWH48_08085	Cytochrome B; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.904
OAH53657.1	OAH55855.1	AWH48_10255	AWH48_04045	Cytochrome B; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).	Cytochrome B5; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.988
OAH53657.1	ftsH	AWH48_10255	AWH48_19840	Cytochrome B; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).	Cell division protein FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family.	0.678
OAH53809.1	OAH53657.1	AWH48_11060	AWH48_10255	Zinc protease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase M16 family.	Cytochrome B; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).	0.991
OAH53809.1	OAH53817.1	AWH48_11060	AWH48_11105	Zinc protease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase M16 family.	Zinc protease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.753
OAH53809.1	OAH54543.1	AWH48_11060	AWH48_08085	Zinc protease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase M16 family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.742
OAH53809.1	OAH55855.1	AWH48_11060	AWH48_04045	Zinc protease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase M16 family.	Cytochrome B5; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.705
OAH53817.1	OAH53657.1	AWH48_11105	AWH48_10255	Zinc protease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome B; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).	0.991
OAH53817.1	OAH53809.1	AWH48_11105	AWH48_11060	Zinc protease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Zinc protease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase M16 family.	0.753
OAH53817.1	OAH53818.1	AWH48_11105	AWH48_11110	Zinc protease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Zinc protease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.995
OAH53817.1	OAH54543.1	AWH48_11105	AWH48_08085	Zinc protease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.742
OAH53817.1	OAH55855.1	AWH48_11105	AWH48_04045	Zinc protease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome B5; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.705