OAH56654.1 protein (Domibacillus aminovorans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

OAH56654.1

RsbT co-antagonist protein RsbRB; Derived by automated computational analysis using gene prediction method: Protein Homology. (280 aa)

Predicted Functional Partners:

OAH58500.1

0.949

OAH58495.1

0.938

OAH58615.1

0.891

OAH53772.1

0.857

OAH58499.1

0.840

OAH55858.1

0.830

rsbW

0.818

OAH58577.1

0.804

spoIIAB

0.747

OAH54731.1

0.744

Your Current Organism:

Domibacillus aminovorans

NCBI taxonomy Id: 29332
Other names: Bacillus aminovorans, D. aminovorans, LMG 16796, LMG:16796

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OAH53772.1	OAH54731.1	AWH48_10875	AWH48_09115	Flagellar motor switch protein FliN; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.877
OAH53772.1	OAH55858.1	AWH48_10875	AWH48_04060	Flagellar motor switch protein FliN; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.918
OAH53772.1	OAH56654.1	AWH48_10875	AWH48_20025	Flagellar motor switch protein FliN; Derived by automated computational analysis using gene prediction method: Protein Homology.	RsbT co-antagonist protein RsbRB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.857
OAH53772.1	OAH58495.1	AWH48_10875	AWH48_17205	Flagellar motor switch protein FliN; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphoserine phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.573
OAH53772.1	OAH58499.1	AWH48_10875	AWH48_17225	Flagellar motor switch protein FliN; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphoserine phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.573
OAH53772.1	OAH58500.1	AWH48_10875	AWH48_17230	Flagellar motor switch protein FliN; Derived by automated computational analysis using gene prediction method: Protein Homology.	Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.467
OAH53772.1	OAH58577.1	AWH48_10875	AWH48_17235	Flagellar motor switch protein FliN; Derived by automated computational analysis using gene prediction method: Protein Homology.	RsbT antagonist protein RsbS; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.857
OAH53772.1	OAH58615.1	AWH48_10875	AWH48_16560	Flagellar motor switch protein FliN; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
OAH53772.1	rsbW	AWH48_10875	AWH48_17215	Flagellar motor switch protein FliN; Derived by automated computational analysis using gene prediction method: Protein Homology.	Anti-sigma B factor RsbW; Negative regulator of sigma-B activity. Phosphorylates and inactivates its specific antagonist protein, RsbV. Upon phosphorylation of RsbV, RsbW is released and binds to sigma-B, thereby blocking its ability to form an RNA polymerase holoenzyme (E-sigma-B).	0.467
OAH53772.1	spoIIAB	AWH48_10875	AWH48_04495	Flagellar motor switch protein FliN; Derived by automated computational analysis using gene prediction method: Protein Homology.	Anti-sigma F factor; Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition.	0.467
OAH54731.1	OAH53772.1	AWH48_09115	AWH48_10875	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flagellar motor switch protein FliN; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.877
OAH54731.1	OAH55858.1	AWH48_09115	AWH48_04060	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.995
OAH54731.1	OAH56654.1	AWH48_09115	AWH48_20025	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	RsbT co-antagonist protein RsbRB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.744
OAH54731.1	OAH58495.1	AWH48_09115	AWH48_17205	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphoserine phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.748
OAH54731.1	OAH58499.1	AWH48_09115	AWH48_17225	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphoserine phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.748
OAH54731.1	OAH58577.1	AWH48_09115	AWH48_17235	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	RsbT antagonist protein RsbS; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.744
OAH54731.1	OAH58615.1	AWH48_09115	AWH48_16560	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
OAH55858.1	OAH53772.1	AWH48_04060	AWH48_10875	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Flagellar motor switch protein FliN; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.918
OAH55858.1	OAH54731.1	AWH48_04060	AWH48_09115	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.995
OAH55858.1	OAH56654.1	AWH48_04060	AWH48_20025	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	RsbT co-antagonist protein RsbRB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.830