Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCDG5_1069Cell wall hydrolase/autolysin; High confidence in function and specificity. (245 aa)    
Predicted Functional Partners:
CCDG5_0305
Cell wall hydrolase/autolysin; High confidence in function and specificity.
  
  
 
0.905
radA
DNA repair protein RadA homolog; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function.
       0.788
CCDG5_1070
Hypothetical protein; Family membership.
       0.603
CCDG5_0116
Hypothetical protein; Family membership.
 
   0.571
CCDG5_0539
Putative membrane protein.
 
  
 0.470
CCDG5_1071
ErfK/YbiS/YcfS/YnhG family protein; High confidence in function and specificity.
     
 0.446
CCDG5_1708
Hypothetical protein; Family membership.
  
  
 0.422
cinA
Putative competence-damage inducible protein; High confidence in function and specificity; Belongs to the CinA family.
 
     0.407
Your Current Organism:
Clostridium cellulosi
NCBI taxonomy Id: 29343
Other names: [. cellulosi, [Clostridium] cellulosi
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