STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCDG5_1103RpiR family transcriptional regulator; High confidence in function and specificity. (297 aa)    
Predicted Functional Partners:
CCDG5_1102
Hypothetical protein; High confidence in function and specificity.
       0.835
ispH
Hydroxymethylbutenyl pyrophosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family.
       0.750
CCDG5_1100
Hypothetical protein; Family membership; Belongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family.
       0.749
cmk
Cytidylate kinase; High confidence in function and specificity.
       0.749
CCDG5_1877
Chloride channel protein; High confidence in function and specificity.
   
  
 0.519
CCDG5_1148
Hypothetical protein.
  
     0.500
CCDG5_1012
Putative membrane protein.
  
     0.496
CCDG5_0681
Primosome subunit DnaD; High confidence in function and specificity.
  
     0.471
ecfT
Energy-coupling factor transporter transmembrane protein EcfT; High confidence in function and specificity.
  
    0.445
CCDG5_1013
Putative membrane protein.
  
     0.411
Your Current Organism:
Clostridium cellulosi
NCBI taxonomy Id: 29343
Other names: [. cellulosi, [Clostridium] cellulosi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.