Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
OPJ56736.1Hypothetical protein. (231 aa)    
Predicted Functional Partners:
ytfJ
Putative spore protein YtfJ.
  
     0.474
gerBA_2
Spore germination protein B1.
 
   
 0.474
gerBC
Spore germination protein B3 precursor.
 
  
 0.458
gerBA_3
Spore germination protein B1.
 
   
 0.438
spoIVB
SpoIVB peptidase precursor.
  
     0.434
OPJ56727.1
SpoVA protein.
 
  
 0.428
spoIVA
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
  
     0.424
ylbJ
Sporulation integral membrane protein YlbJ.
  
     0.415
OPJ56725.1
SpoVA protein.
 
    0.409
gerBA_1
Spore germination protein B1.
  
     0.407
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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