STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OPJ56739.1Hypothetical protein. (152 aa)    
Predicted Functional Partners:
OPJ56872.1
Hypothetical protein.
 
     0.671
OPJ56873.1
Hypothetical protein.
 
     0.622
OPJ57286.1
Hypothetical protein.
  
     0.620
OPJ54642.1
Hypothetical protein.
  
     0.597
ndx1_1
Diadenosine hexaphosphate hydrolase.
 
     0.595
yndE
Spore germination protein YndE.
  
     0.586
OPJ56074.1
Hypothetical protein.
  
     0.562
OPJ56958.1
Hypothetical protein; Thiamine pyrophosphokinase C terminal.
  
     0.547
OPJ55582.1
Hypothetical protein.
  
     0.544
trmFO
methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TrmFO.
  
     0.543
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.