STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OPJ56765.1Hypothetical protein. (120 aa)    
Predicted Functional Partners:
OPJ56757.1
Hypothetical protein.
 
     0.818
OPJ56943.1
SpoIIIAH-like protein.
  
    0.784
ydcC
Sporulation protein YdcC.
  
    0.775
OPJ55237.1
Hypothetical protein.
  
     0.773
OPJ55070.1
Hypothetical protein.
  
     0.771
OPJ56835.1
Hypothetical protein.
  
     0.770
OPJ55090.1
Spore cortex protein YabQ.
  
     0.757
OPJ54801.1
LysM domain protein.
  
    0.754
OPJ56074.1
Hypothetical protein.
  
     0.746
OPJ56873.1
Hypothetical protein.
  
     0.726
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.