Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
cstACarbon starvation protein A. (470 aa)    
Predicted Functional Partners:
ypdB
Transcriptional regulatory protein YpdB.
 
   
 0.768
ypdA_1
Sensor histidine kinase YpdA.
 
   
 0.752
rbsC_1
Ribose transport system permease protein RbsC; Belongs to the binding-protein-dependent transport system permease family.
   
    0.566
OPJ56799.1
Hypothetical protein.
       0.541
rbsB
D-ribose-binding periplasmic protein precursor.
   
  
 0.489
birA
Bifunctional ligase/repressor BirA; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
     
 0.440
OPJ56470.1
Branched-chain amino acid transport system / permease component; Belongs to the binding-protein-dependent transport system permease family.
   
    0.429
OPJ56471.1
Ribose ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
   
    0.429
rbsA
Ribose import ATP-binding protein RbsA; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
   
  
 0.404
mglA_1
Galactose/methyl galactoside import ATP-binding protein MglA.
   
  
 0.404
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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