Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OPJ56800.1Hypothetical protein. (113 aa)    
Predicted Functional Partners:
OPJ56801.1
Hypothetical protein.
 
     0.961
rsbV
anti-sigma-B factor antagonist; Belongs to the anti-sigma-factor antagonist family.
  
 0.912
rsbP
Phosphoserine phosphatase RsbP.
  
 0.719
OPJ56513.1
Hypothetical protein.
  
     0.679
cph2
Phytochrome-like protein cph2.
   
 
 0.678
sigF_1
RNA polymerase sigma-F factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
 
 0.652
flgB
Flagellar basal body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.
   
    0.625
fliG
Flagellar motor switch protein FliG.
   
    0.625
pomA
Chemotaxis protein PomA.
   
    0.625
flgK
Flagellar hook-associated protein 1.
   
    0.625
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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