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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OPJ56811.1Putative permease. (232 aa)    
Predicted Functional Partners:
nifJ
Pyruvate-flavodoxin oxidoreductase.
    
 0.967
OPJ56809.1
Hypothetical protein.
 
     0.940
OPJ56810.1
Putative permease.
 
    
0.867
hndA_1
NADP-reducing hydrogenase subunit HndA.
    
 0.753
clp
CRP-like protein Clp.
 
     0.721
hndC_3
NADP-reducing hydrogenase subunit HndC.
     
 0.641
hndC_1
NADP-reducing hydrogenase subunit HndC.
    
 0.631
hndC_2
NADP-reducing hydrogenase subunit HndC.
    
 0.631
oadG
Oxaloacetate decarboxylase gamma chain.
  
  
 0.549
OPJ56812.1
Hypothetical protein.
       0.515
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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