Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
corAMagnesium transport protein CorA. (320 aa)    
Predicted Functional Partners:
rsbV
anti-sigma-B factor antagonist; Belongs to the anti-sigma-factor antagonist family.
  
    0.693
rsbW
Serine-protein kinase RsbW.
  
    0.628
murF_1
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase.
       0.547
cadA_1
Cadmium, zinc and cobalt-transporting ATPase.
     
 0.515
copA
Copper-exporting P-type ATPase A.
     
 0.515
yigZ
IMPACT family member YigZ.
  
    0.508
purL
Phosphoribosylformylglycinamidine synthase 2.
     
 0.421
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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