nudL protein (Clostridium thermoalcaliphilum)

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Score

nudL

Putative nudix hydrolase NudL. (206 aa)

Predicted Functional Partners:

rnr

0.916

rph

0.909

cshA_1

0.870

cshA_2

0.870

ribBA

0.835

pyk

0.780

pncC

0.744

birA

0.716

htrB

0.654

dapF

0.610

Your Current Organism:

Clostridium thermoalcaliphilum

NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
birA	dapF	CLOTH_19460	CLOTH_01810	Bifunctional ligase/repressor BirA; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.	Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.	0.460
birA	nudL	CLOTH_19460	CLOTH_01080	Bifunctional ligase/repressor BirA; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.	Putative nudix hydrolase NudL.	0.716
birA	pncC	CLOTH_19460	CLOTH_01150	Bifunctional ligase/repressor BirA; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.	Nicotinamide-nucleotide amidohydrolase PncC; Belongs to the CinA family.	0.504
birA	pyk	CLOTH_19460	CLOTH_18010	Bifunctional ligase/repressor BirA; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.	Pyruvate kinase; Belongs to the pyruvate kinase family.	0.458
birA	ribBA	CLOTH_19460	CLOTH_14300	Bifunctional ligase/repressor BirA; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.	Riboflavin biosynthesis protein RibBA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.	0.764
birA	rph	CLOTH_19460	CLOTH_07120	Bifunctional ligase/repressor BirA; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.	Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.	0.592
cshA_1	nudL	CLOTH_02980	CLOTH_01080	DEAD-box ATP-dependent RNA helicase CshA.	Putative nudix hydrolase NudL.	0.870
cshA_1	pncC	CLOTH_02980	CLOTH_01150	DEAD-box ATP-dependent RNA helicase CshA.	Nicotinamide-nucleotide amidohydrolase PncC; Belongs to the CinA family.	0.412
cshA_1	rnr	CLOTH_02980	CLOTH_08450	DEAD-box ATP-dependent RNA helicase CshA.	Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.	0.450
cshA_1	rph	CLOTH_02980	CLOTH_07120	DEAD-box ATP-dependent RNA helicase CshA.	Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.	0.866
cshA_2	nudL	CLOTH_16330	CLOTH_01080	DEAD-box ATP-dependent RNA helicase CshA; Belongs to the DEAD box helicase family.	Putative nudix hydrolase NudL.	0.870
cshA_2	pncC	CLOTH_16330	CLOTH_01150	DEAD-box ATP-dependent RNA helicase CshA; Belongs to the DEAD box helicase family.	Nicotinamide-nucleotide amidohydrolase PncC; Belongs to the CinA family.	0.412
cshA_2	rnr	CLOTH_16330	CLOTH_08450	DEAD-box ATP-dependent RNA helicase CshA; Belongs to the DEAD box helicase family.	Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.	0.513
cshA_2	rph	CLOTH_16330	CLOTH_07120	DEAD-box ATP-dependent RNA helicase CshA; Belongs to the DEAD box helicase family.	Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.	0.866
dapF	birA	CLOTH_01810	CLOTH_19460	Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.	Bifunctional ligase/repressor BirA; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.	0.460
dapF	nudL	CLOTH_01810	CLOTH_01080	Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.	Putative nudix hydrolase NudL.	0.610
dapF	ribBA	CLOTH_01810	CLOTH_14300	Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.	Riboflavin biosynthesis protein RibBA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.	0.731
htrB	nudL	CLOTH_14780	CLOTH_01080	Serine protease Do-like HtrB.	Putative nudix hydrolase NudL.	0.654
nudL	birA	CLOTH_01080	CLOTH_19460	Putative nudix hydrolase NudL.	Bifunctional ligase/repressor BirA; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.	0.716
nudL	cshA_1	CLOTH_01080	CLOTH_02980	Putative nudix hydrolase NudL.	DEAD-box ATP-dependent RNA helicase CshA.	0.870