STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OPJ56827.1Hypothetical protein. (105 aa)    
Predicted Functional Partners:
OPJ56323.1
Hypothetical protein.
  
     0.725
OPJ55442.1
Colicin V production protein.
  
     0.719
OPJ55940.1
Hypothetical protein.
  
     0.665
OPJ55237.1
Hypothetical protein.
  
     0.658
OPJ56305.1
Hypothetical protein.
  
     0.650
OPJ56738.1
Hypothetical protein; Conserved virulence factor C.
  
     0.623
OPJ56835.1
Hypothetical protein.
  
     0.582
OPJ57089.1
Hypothetical protein.
  
     0.582
OPJ55639.1
Hypothetical protein.
  
     0.563
OPJ56046.1
FlgN protein.
  
     0.561
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.