STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OPJ56834.1Small, acid-soluble spore protein beta. (69 aa)    
Predicted Functional Partners:
gpr
Germination protease precursor; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.
  
  
 0.754
spoIIE
Stage II sporulation protein E.
  
     0.665
OPJ56835.1
Hypothetical protein.
 
     0.648
ylbJ
Sporulation integral membrane protein YlbJ.
  
     0.638
OPJ56867.1
PRC-barrel domain protein.
  
     0.633
spoVAD
Stage V sporulation protein AD.
  
    0.625
gerBA_1
Spore germination protein B1.
  
     0.605
OPJ56990.1
Putative stage IV sporulation protein YqfD.
  
     0.599
spoIIIAE
Stage III sporulation protein AE precursor.
  
     0.585
OPJ56942.1
Hypothetical protein.
  
     0.573
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.