STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
albFPutative zinc protease AlbF. (428 aa)    
Predicted Functional Partners:
OPJ56846.1
Peptidase M16 inactive domain protein.
 
  
 0.986
hndA_1
NADP-reducing hydrogenase subunit HndA.
   
 
 0.981
hndC_1
NADP-reducing hydrogenase subunit HndC.
  
 
 0.981
hndC_2
NADP-reducing hydrogenase subunit HndC.
  
 
 0.981
hndC_3
NADP-reducing hydrogenase subunit HndC.
  
 
 0.878
rsxB_2
Electron transport complex subunit RsxB; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.
  
   0.874
hndA_2
NADP-reducing hydrogenase subunit HndA.
   
   0.871
hndA_3
NADP-reducing hydrogenase subunit HndA.
   
   0.871
ndhI_2
NAD(P)H-quinone oxidoreductase subunit I.
  
   0.859
ndhI_4
NAD(P)H-quinone oxidoreductase subunit I.
  
   0.859
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.