Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ftsL_1Cell division protein FtsL. (119 aa)    
Predicted Functional Partners:
spoVD_1
Stage V sporulation protein D.
 
 
 0.889
divIB
Cell division protein DivIB; Essential cell division protein.
 
 
 
 0.869
spoVD_3
Stage V sporulation protein D.
 
 
 0.777
OPJ55424.1
Replication initiation and membrane attachment.
  
     0.748
OPJ55168.1
Hypothetical protein.
  
     0.738
rsmH_1
Ribosomal RNA small subunit methyltransferase H; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.
  
    0.729
ftsW
Lipid II flippase FtsW; Belongs to the SEDS family.
   
 
 0.727
OPJ55266.1
ATP synthase I chain.
  
     0.726
lgt
Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family.
       0.714
OPJ55237.1
Hypothetical protein.
  
     0.695
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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