Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| OPJ56056.1 | fliN | CLOTH_12340 | CLOTH_03810 | Anti-sigma28 factor FlgM. | Flagellar motor switch protein FliN. | 0.910 |
| OPJ56056.1 | sigE | CLOTH_12340 | CLOTH_01470 | Anti-sigma28 factor FlgM. | RNA polymerase sigma-35 factor precursor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.915 |
| OPJ56867.1 | sigE | CLOTH_01490 | CLOTH_01470 | PRC-barrel domain protein. | RNA polymerase sigma-35 factor precursor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.861 |
| OPJ56867.1 | spoIIAB | CLOTH_01490 | CLOTH_00020 | PRC-barrel domain protein. | Anti-sigma F factor; Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition. | 0.603 |
| OPJ56867.1 | spoIIE | CLOTH_01490 | CLOTH_17580 | PRC-barrel domain protein. | Stage II sporulation protein E. | 0.703 |
| OPJ56867.1 | spoIIGA | CLOTH_01490 | CLOTH_01460 | PRC-barrel domain protein. | Sporulation sigma-E factor-processing peptidase; Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR. Belongs to the peptidase U4 family. | 0.840 |
| OPJ56867.1 | spoIVA | CLOTH_01490 | CLOTH_01600 | PRC-barrel domain protein. | Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat. | 0.813 |
| OPJ56867.1 | spoVAD | CLOTH_01490 | CLOTH_00080 | PRC-barrel domain protein. | Stage V sporulation protein AD. | 0.752 |
| fliN | OPJ56056.1 | CLOTH_03810 | CLOTH_12340 | Flagellar motor switch protein FliN. | Anti-sigma28 factor FlgM. | 0.910 |
| fliN | sigE | CLOTH_03810 | CLOTH_01470 | Flagellar motor switch protein FliN. | RNA polymerase sigma-35 factor precursor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.781 |
| fliN | spoIIAB | CLOTH_03810 | CLOTH_00020 | Flagellar motor switch protein FliN. | Anti-sigma F factor; Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition. | 0.471 |
| rpoB | rpoC | CLOTH_18670 | CLOTH_18660 | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
| rpoB | sigE | CLOTH_18670 | CLOTH_01470 | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | RNA polymerase sigma-35 factor precursor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.825 |
| rpoB | spoIVA | CLOTH_18670 | CLOTH_01600 | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat. | 0.407 |
| rpoC | rpoB | CLOTH_18660 | CLOTH_18670 | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
| rpoC | sigE | CLOTH_18660 | CLOTH_01470 | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | RNA polymerase sigma-35 factor precursor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.801 |
| rpoC | spoIIAB | CLOTH_18660 | CLOTH_00020 | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | Anti-sigma F factor; Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition. | 0.656 |
| sigE | OPJ56056.1 | CLOTH_01470 | CLOTH_12340 | RNA polymerase sigma-35 factor precursor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Anti-sigma28 factor FlgM. | 0.915 |
| sigE | OPJ56867.1 | CLOTH_01470 | CLOTH_01490 | RNA polymerase sigma-35 factor precursor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | PRC-barrel domain protein. | 0.861 |
| sigE | fliN | CLOTH_01470 | CLOTH_03810 | RNA polymerase sigma-35 factor precursor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Flagellar motor switch protein FliN. | 0.781 |
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