Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OPJ56873.1Hypothetical protein. (63 aa)    
Predicted Functional Partners:
OPJ56872.1
Hypothetical protein.
 
     0.946
OPJ55237.1
Hypothetical protein.
  
     0.770
OPJ56835.1
Hypothetical protein.
  
     0.750
hemH
Ferrochelatase.
 
     0.728
OPJ56765.1
Hypothetical protein.
  
     0.726
OPJ56519.1
Hypothetical protein.
  
     0.719
OPJ54801.1
LysM domain protein.
  
     0.715
OPJ55070.1
Hypothetical protein.
  
     0.688
OPJ56943.1
SpoIIIAH-like protein.
  
     0.678
ycf3
Photosystem I assembly protein Ycf3.
  
     0.678
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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