OPJ56943.1 protein (Clostridium thermoalcaliphilum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

OPJ56943.1

SpoIIIAH-like protein. (226 aa)

Predicted Functional Partners:

OPJ56942.1

0.998

OPJ56936.1

0.970

spoIIIAE

0.963

OPJ56941.1

0.951

OPJ56938.1

0.928

OPJ56937.1

0.914

OPJ56939.1

0.882

OPJ55597.1

0.828

OPJ56765.1

0.784

OPJ56990.1

0.777

Your Current Organism:

Clostridium thermoalcaliphilum

NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OPJ55597.1	OPJ56936.1	CLOTH_13560	CLOTH_02180	Stage II sporulation protein SpoIIP.	Hypothetical protein; Transcription termination factor Rho.	0.854
OPJ55597.1	OPJ56937.1	CLOTH_13560	CLOTH_02190	Stage II sporulation protein SpoIIP.	Stage III sporulation protein SpoAB.	0.436
OPJ55597.1	OPJ56938.1	CLOTH_13560	CLOTH_02200	Stage II sporulation protein SpoIIP.	Stage III sporulation protein AC/AD protein family protein.	0.852
OPJ55597.1	OPJ56939.1	CLOTH_13560	CLOTH_02210	Stage II sporulation protein SpoIIP.	Stage III sporulation protein AC/AD protein family protein.	0.813
OPJ55597.1	OPJ56941.1	CLOTH_13560	CLOTH_02230	Stage II sporulation protein SpoIIP.	Stage III sporulation protein SpoIIIAF.	0.432
OPJ55597.1	OPJ56942.1	CLOTH_13560	CLOTH_02240	Stage II sporulation protein SpoIIP.	Hypothetical protein.	0.790
OPJ55597.1	OPJ56943.1	CLOTH_13560	CLOTH_02250	Stage II sporulation protein SpoIIP.	SpoIIIAH-like protein.	0.828
OPJ55597.1	OPJ56990.1	CLOTH_13560	CLOTH_02720	Stage II sporulation protein SpoIIP.	Putative stage IV sporulation protein YqfD.	0.846
OPJ55597.1	spoIIIAE	CLOTH_13560	CLOTH_02220	Stage II sporulation protein SpoIIP.	Stage III sporulation protein AE precursor.	0.824
OPJ56765.1	OPJ56937.1	CLOTH_00470	CLOTH_02190	Hypothetical protein.	Stage III sporulation protein SpoAB.	0.534
OPJ56765.1	OPJ56941.1	CLOTH_00470	CLOTH_02230	Hypothetical protein.	Stage III sporulation protein SpoIIIAF.	0.712
OPJ56765.1	OPJ56942.1	CLOTH_00470	CLOTH_02240	Hypothetical protein.	Hypothetical protein.	0.410
OPJ56765.1	OPJ56943.1	CLOTH_00470	CLOTH_02250	Hypothetical protein.	SpoIIIAH-like protein.	0.784
OPJ56765.1	OPJ56990.1	CLOTH_00470	CLOTH_02720	Hypothetical protein.	Putative stage IV sporulation protein YqfD.	0.685
OPJ56765.1	spoIIIAE	CLOTH_00470	CLOTH_02220	Hypothetical protein.	Stage III sporulation protein AE precursor.	0.564
OPJ56936.1	OPJ55597.1	CLOTH_02180	CLOTH_13560	Hypothetical protein; Transcription termination factor Rho.	Stage II sporulation protein SpoIIP.	0.854
OPJ56936.1	OPJ56937.1	CLOTH_02180	CLOTH_02190	Hypothetical protein; Transcription termination factor Rho.	Stage III sporulation protein SpoAB.	0.978
OPJ56936.1	OPJ56938.1	CLOTH_02180	CLOTH_02200	Hypothetical protein; Transcription termination factor Rho.	Stage III sporulation protein AC/AD protein family protein.	0.978
OPJ56936.1	OPJ56939.1	CLOTH_02180	CLOTH_02210	Hypothetical protein; Transcription termination factor Rho.	Stage III sporulation protein AC/AD protein family protein.	0.969
OPJ56936.1	OPJ56941.1	CLOTH_02180	CLOTH_02230	Hypothetical protein; Transcription termination factor Rho.	Stage III sporulation protein SpoIIIAF.	0.880