STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OPJ56964.1Hypothetical protein. (206 aa)    
Predicted Functional Partners:
xerD_1
Tyrosine recombinase XerD; Belongs to the 'phage' integrase family.
  
    0.757
OPJ56962.1
Hypothetical protein.
       0.661
nudF
ADP-ribose pyrophosphatase; Belongs to the Nudix hydrolase family.
       0.661
OPJ55597.1
Stage II sporulation protein SpoIIP.
      
 0.656
lytB_2
Amidase enhancer precursor.
      
 0.652
spo0A_1
Stage 0 sporulation protein A; May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process.
     
 0.620
OPJ56959.1
Hypothetical protein.
       0.615
OPJ56958.1
Hypothetical protein; Thiamine pyrophosphokinase C terminal.
       0.603
mraY_2
phospho-N-acetylmuramoyl-pentapeptide- transferase.
       0.603
OPJ56960.1
Undecaprenyl-phosphate mannosyltransferase.
       0.595
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.