Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
OPJ56964.1Hypothetical protein. (206 aa)    
Predicted Functional Partners:
xerD_1
Tyrosine recombinase XerD; Belongs to the 'phage' integrase family.
  
    0.756
OPJ56962.1
Hypothetical protein.
       0.705
nudF
ADP-ribose pyrophosphatase; Belongs to the Nudix hydrolase family.
       0.705
deoB
Phosphopentomutase; Phosphotransfer between the C1 and C5 carbon atoms of pentose; Belongs to the phosphopentomutase family.
       0.642
pdp
Pyrimidine-nucleoside phosphorylase.
       0.626
OPJ56937.1
Stage III sporulation protein SpoAB.
   
  
 0.625
spo0A_1
Stage 0 sporulation protein A; May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process.
     
 0.618
spmB
Spore maturation protein B.
   
  
 0.600
OPJ56959.1
Hypothetical protein.
       0.597
mraY_2
phospho-N-acetylmuramoyl-pentapeptide- transferase.
       0.587
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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