Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
xerD_1Tyrosine recombinase XerD; Belongs to the 'phage' integrase family. (294 aa)    
Predicted Functional Partners:
OPJ56964.1
Hypothetical protein.
  
    0.756
nifJ
Pyruvate-flavodoxin oxidoreductase.
    
  0.672
prs_1
Ribose-phosphate pyrophosphokinase.
  
    0.637
nudF
ADP-ribose pyrophosphatase; Belongs to the Nudix hydrolase family.
  
    0.577
OPJ56962.1
Hypothetical protein.
       0.565
whiA
Sporulation transcription regulator WhiA; Involved in cell division and chromosome segregation.
   
    0.555
spoIIIE
DNA translocase SpoIIIE; Belongs to the FtsK/SpoIIIE/SftA family.
  
   
 0.542
mraY_2
phospho-N-acetylmuramoyl-pentapeptide- transferase.
       0.540
OPJ56960.1
Undecaprenyl-phosphate mannosyltransferase.
       0.537
deoB
Phosphopentomutase; Phosphotransfer between the C1 and C5 carbon atoms of pentose; Belongs to the phosphopentomutase family.
       0.530
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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