Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ackA | ydcP_1 | CLOTH_02070 | CLOTH_02540 | Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family. | Putative protease YdcP precursor. | 0.468 |
| mltG | pcm | CLOTH_02520 | CLOTH_02530 | Putative aminodeoxychorismate lyase; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. | protein-L-isoaspartate O-methyltransferase. | 0.749 |
| mltG | sigK | CLOTH_02520 | CLOTH_02570 | Putative aminodeoxychorismate lyase; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. | RNA polymerase sigma-28 factor precursor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.467 |
| mltG | spoVD_2 | CLOTH_02520 | CLOTH_02560 | Putative aminodeoxychorismate lyase; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. | Stage V sporulation protein D. | 0.625 |
| mltG | udk | CLOTH_02520 | CLOTH_02550 | Putative aminodeoxychorismate lyase; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. | Uridine kinase. | 0.741 |
| mltG | ydcP_1 | CLOTH_02520 | CLOTH_02540 | Putative aminodeoxychorismate lyase; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. | Putative protease YdcP precursor. | 0.648 |
| pcm | mltG | CLOTH_02530 | CLOTH_02520 | protein-L-isoaspartate O-methyltransferase. | Putative aminodeoxychorismate lyase; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. | 0.749 |
| pcm | sigK | CLOTH_02530 | CLOTH_02570 | protein-L-isoaspartate O-methyltransferase. | RNA polymerase sigma-28 factor precursor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.541 |
| pcm | spoVD_2 | CLOTH_02530 | CLOTH_02560 | protein-L-isoaspartate O-methyltransferase. | Stage V sporulation protein D. | 0.655 |
| pcm | thrZ_2 | CLOTH_02530 | CLOTH_09810 | protein-L-isoaspartate O-methyltransferase. | threonine--tRNA ligase 2. | 0.422 |
| pcm | udk | CLOTH_02530 | CLOTH_02550 | protein-L-isoaspartate O-methyltransferase. | Uridine kinase. | 0.836 |
| pcm | ydcP_1 | CLOTH_02530 | CLOTH_02540 | protein-L-isoaspartate O-methyltransferase. | Putative protease YdcP precursor. | 0.944 |
| rlmN | ydcP_1 | CLOTH_01920 | CLOTH_02540 | Putative dual-specificity RNA methyltransferase RlmN; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs; Belongs to the radical SAM superfamily. RlmN family. | Putative protease YdcP precursor. | 0.410 |
| sigK | mltG | CLOTH_02570 | CLOTH_02520 | RNA polymerase sigma-28 factor precursor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Putative aminodeoxychorismate lyase; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. | 0.467 |
| sigK | pcm | CLOTH_02570 | CLOTH_02530 | RNA polymerase sigma-28 factor precursor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | protein-L-isoaspartate O-methyltransferase. | 0.541 |
| sigK | spoVD_2 | CLOTH_02570 | CLOTH_02560 | RNA polymerase sigma-28 factor precursor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Stage V sporulation protein D. | 0.624 |
| sigK | udk | CLOTH_02570 | CLOTH_02550 | RNA polymerase sigma-28 factor precursor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Uridine kinase. | 0.553 |
| sigK | ydcP_1 | CLOTH_02570 | CLOTH_02540 | RNA polymerase sigma-28 factor precursor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Putative protease YdcP precursor. | 0.493 |
| spoVD_2 | mltG | CLOTH_02560 | CLOTH_02520 | Stage V sporulation protein D. | Putative aminodeoxychorismate lyase; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. | 0.625 |
| spoVD_2 | pcm | CLOTH_02560 | CLOTH_02530 | Stage V sporulation protein D. | protein-L-isoaspartate O-methyltransferase. | 0.655 |
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