Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
spoVD_2Stage V sporulation protein D. (557 aa)    
Predicted Functional Partners:
ftsW
Lipid II flippase FtsW; Belongs to the SEDS family.
 0.969
mrdB
Rod shape-determining protein RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.
 0.966
spoVD_3
Stage V sporulation protein D.
  
  
0.884
dacF_2
D-alanyl-D-alanine carboxypeptidase DacF precursor; Belongs to the peptidase S11 family.
  
 
 0.867
dacF_3
D-alanyl-D-alanine carboxypeptidase DacF precursor; Belongs to the peptidase S11 family.
  
 
 0.860
divIB
Cell division protein DivIB; Essential cell division protein.
  
 
 0.810
mrcA
Penicillin-binding protein 1A.
  
 
0.773
ftsL_2
Cell division protein FtsL.
  
 
 0.746
spoVD_1
Stage V sporulation protein D.
 
  
0.736
murE_1
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD- lysine ligase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily.
 
  
 0.711
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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