STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OPJ56978.12-hydroxyglutaryl-CoA dehydratase, D-component. (371 aa)    
Predicted Functional Partners:
fldI_1
R-phenyllactate dehydratase activator.
   
 0.995
OPJ56977.1
2-hydroxyglutaryl-CoA dehydratase, D-component.
   
0.986
fldI_3
R-phenyllactate dehydratase activator.
   
 0.912
fldI_2
R-phenyllactate dehydratase activator.
   
 0.624
yhdN_1
General stress protein 69.
  
     0.552
cwlC_1
Sporulation-specific N-acetylmuramoyl-L-alanine amidase.
       0.524
gerAB
Spore germination protein A2.
  
     0.491
OPJ56739.1
Hypothetical protein.
  
     0.469
OPJ55580.1
Sporulation and spore germination.
  
     0.465
OPJ56815.1
Hypothetical protein.
  
     0.430
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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