Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OPJ56988.1Hypothetical protein. (166 aa)    
Predicted Functional Partners:
OPJ56323.1
Hypothetical protein.
  
     0.678
ndhI_2
NAD(P)H-quinone oxidoreductase subunit I.
 
 
 0.668
hndC_1
NADP-reducing hydrogenase subunit HndC.
  
 
 0.622
hndC_2
NADP-reducing hydrogenase subunit HndC.
  
 
 0.622
OPJ56987.1
Putative superoxide reductase.
       0.578
OPJ56800.1
Hypothetical protein.
  
     0.562
OPJ55442.1
Colicin V production protein.
  
     0.547
OPJ56801.1
Hypothetical protein.
  
     0.531
OPJ56989.1
YabP family protein.
       0.522
ldh
L-lactate dehydrogenase.
  
   
 0.513
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.