Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ccpNTranscriptional repressor CcpN. (212 aa)    
Predicted Functional Partners:
yqfL
Putative pyruvate, phosphate dikinase regulatory protein; Bifunctional serine/threonine kinase and phosphorylase involved in the regulation of the pyruvate, phosphate dikinase (PPDK) by catalyzing its phosphorylation/dephosphorylation.
 
  
 0.949
nifJ
Pyruvate-flavodoxin oxidoreductase.
    
  0.910
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
    
 0.896
ppdK
Pyruvate, phosphate dikinase.
 
 
  0.840
glyS
glycine--tRNA ligase beta subunit.
  
    0.505
glyQ
glycine--tRNA ligase alpha subunit.
       0.503
mazG
Nucleoside triphosphate pyrophosphohydrolase/pyrophosphatase MazG.
  
  
  0.464
OPJ57006.1
Hypothetical protein; Belongs to the UPF0342 family.
       0.449
OPJ57000.1
Nascent polypeptide-associated complex protein.
 
     0.443
polC_2
DNA polymerase III PolC-type; Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity.
 
  
  0.433
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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