Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OPJ57006.1Hypothetical protein; Belongs to the UPF0342 family. (108 aa)    
Predicted Functional Partners:
OPJ55940.1
Hypothetical protein.
  
     0.727
OPJ55064.1
Zinc dependent phospholipase C.
  
     0.713
OPJ55237.1
Hypothetical protein.
  
     0.712
OPJ56941.1
Stage III sporulation protein SpoIIIAF.
  
     0.678
OPJ55070.1
Hypothetical protein.
  
     0.652
OPJ56765.1
Hypothetical protein.
  
     0.599
hemH
Ferrochelatase.
  
     0.577
OPJ56757.1
Hypothetical protein.
  
     0.533
ppdK
Pyruvate, phosphate dikinase.
       0.528
OPJ56396.1
Hypothetical protein.
  
     0.528
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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