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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OPJ57013.1Putative amidase domain protein. (369 aa)    
Predicted Functional Partners:
OPJ55070.1
Hypothetical protein.
  
     0.697
OPJ54801.1
LysM domain protein.
  
     0.678
OPJ55397.1
Hypothetical protein.
 
     0.642
ydcC
Sporulation protein YdcC.
  
     0.623
OPJ56492.1
37-kD nucleoid-associated bacterial protein.
  
     0.607
OPJ55434.1
MazG-like family protein.
  
     0.578
uvsE
UV DNA damage endonuclease.
 
     0.554
OPJ56424.1
Small, acid-soluble spore protein, alpha/beta type.
  
     0.540
mcp1
Methyl-accepting chemotaxis protein 1.
       0.527
OPJ56519.1
Hypothetical protein.
  
     0.527
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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