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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
artPArginine-binding extracellular protein ArtP precursor; Belongs to the bacterial solute-binding protein 3 family. (267 aa)    
Predicted Functional Partners:
artQ
Arginine transport system permease protein ArtQ.
 0.999
artM
Arginine transport ATP-binding protein ArtM.
 
 0.996
kinE
Sporulation kinase E.
  
 
 0.943
ydaM_1
Putative diguanylate cyclase YdaM.
    
 0.919
OPJ56036.1
Blue-light-activated protein.
   
 0.902
argH
Argininosuccinate lyase.
  
  
 0.829
argG
Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
  
  
 0.812
degU
Transcriptional regulatory protein DegU.
    
 0.641
malF
Maltose transport system permease protein MalF.
     
 0.613
gmr
Cyclic di-GMP phosphodiesterase Gmr.
    
 0.608
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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