cheX protein (Clostridium thermoalcaliphilum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

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Co-occurrence

Co-expression

Experiments

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[Homology]

Score

cheX

CheY-P phosphatase CheX. (155 aa)

Predicted Functional Partners:

OPJ56036.1

0.980

kinE

0.801

fliN

0.722

cheY_1

0.656

OPJ55792.1

0.626

OPJ57116.1

0.624

OPJ55851.1

0.612

cheA

0.544

OPJ55830.1

0.538

dacF_1

0.465

Your Current Organism:

Clostridium thermoalcaliphilum

NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OPJ55792.1	OPJ57116.1	CLOTH_09700	CLOTH_03990	Hypothetical protein.	Hypothetical protein.	0.649
OPJ55792.1	cheX	CLOTH_09700	CLOTH_03070	Hypothetical protein.	CheY-P phosphatase CheX.	0.626
OPJ55830.1	OPJ56036.1	CLOTH_10080	CLOTH_12140	Bacteriohemerythrin; Oxygen-binding protein. May be involved in a storage mechanism or for delivery to oxygen-requiring enzymes. The oxygen- binding site contains two iron atoms; Belongs to the hemerythrin family.	Blue-light-activated protein.	0.866
OPJ55830.1	cheA	CLOTH_10080	CLOTH_03930	Bacteriohemerythrin; Oxygen-binding protein. May be involved in a storage mechanism or for delivery to oxygen-requiring enzymes. The oxygen- binding site contains two iron atoms; Belongs to the hemerythrin family.	Chemotaxis protein CheA.	0.494
OPJ55830.1	cheX	CLOTH_10080	CLOTH_03070	Bacteriohemerythrin; Oxygen-binding protein. May be involved in a storage mechanism or for delivery to oxygen-requiring enzymes. The oxygen- binding site contains two iron atoms; Belongs to the hemerythrin family.	CheY-P phosphatase CheX.	0.538
OPJ55830.1	kinE	CLOTH_10080	CLOTH_12130	Bacteriohemerythrin; Oxygen-binding protein. May be involved in a storage mechanism or for delivery to oxygen-requiring enzymes. The oxygen- binding site contains two iron atoms; Belongs to the hemerythrin family.	Sporulation kinase E.	0.869
OPJ55851.1	OPJ56036.1	CLOTH_10290	CLOTH_12140	Putative response regulatory protein.	Blue-light-activated protein.	0.859
OPJ55851.1	cheA	CLOTH_10290	CLOTH_03930	Putative response regulatory protein.	Chemotaxis protein CheA.	0.919
OPJ55851.1	cheX	CLOTH_10290	CLOTH_03070	Putative response regulatory protein.	CheY-P phosphatase CheX.	0.612
OPJ55851.1	cheY_1	CLOTH_10290	CLOTH_03820	Putative response regulatory protein.	Chemotaxis protein CheY.	0.730
OPJ55851.1	fliN	CLOTH_10290	CLOTH_03810	Putative response regulatory protein.	Flagellar motor switch protein FliN.	0.867
OPJ55851.1	kinE	CLOTH_10290	CLOTH_12130	Putative response regulatory protein.	Sporulation kinase E.	0.951
OPJ56036.1	OPJ55830.1	CLOTH_12140	CLOTH_10080	Blue-light-activated protein.	Bacteriohemerythrin; Oxygen-binding protein. May be involved in a storage mechanism or for delivery to oxygen-requiring enzymes. The oxygen- binding site contains two iron atoms; Belongs to the hemerythrin family.	0.866
OPJ56036.1	OPJ55851.1	CLOTH_12140	CLOTH_10290	Blue-light-activated protein.	Putative response regulatory protein.	0.859
OPJ56036.1	cheA	CLOTH_12140	CLOTH_03930	Blue-light-activated protein.	Chemotaxis protein CheA.	0.993
OPJ56036.1	cheX	CLOTH_12140	CLOTH_03070	Blue-light-activated protein.	CheY-P phosphatase CheX.	0.980
OPJ56036.1	cheY_1	CLOTH_12140	CLOTH_03820	Blue-light-activated protein.	Chemotaxis protein CheY.	0.976
OPJ56036.1	fliN	CLOTH_12140	CLOTH_03810	Blue-light-activated protein.	Flagellar motor switch protein FliN.	0.996
OPJ56036.1	kinE	CLOTH_12140	CLOTH_12130	Blue-light-activated protein.	Sporulation kinase E.	0.999
OPJ57116.1	OPJ55792.1	CLOTH_03990	CLOTH_09700	Hypothetical protein.	Hypothetical protein.	0.649