sigA protein (Clostridium thermoalcaliphilum)

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sigA

RNA polymerase sigma factor SigA; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. (383 aa)

Predicted Functional Partners:

dnaG_1

0.973

rpoB

0.972

rpoA

0.960

rpoC

0.959

rpoZ

0.925

kinE

0.880

carD

0.868

OPJ55916.1

0.852

whiA

0.823

fur

0.778

Your Current Organism:

Clostridium thermoalcaliphilum

NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OPJ55916.1	rpoA	CLOTH_10940	CLOTH_18300	HTH domain protein.	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.843
OPJ55916.1	rpoB	CLOTH_10940	CLOTH_18670	HTH domain protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.859
OPJ55916.1	rpoC	CLOTH_10940	CLOTH_18660	HTH domain protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.844
OPJ55916.1	rpoZ	CLOTH_10940	CLOTH_01840	HTH domain protein.	DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.825
OPJ55916.1	sigA	CLOTH_10940	CLOTH_03350	HTH domain protein.	RNA polymerase sigma factor SigA; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.	0.852
carD	rpoA	CLOTH_18960	CLOTH_18300	RNA polymerase-binding transcription factor CarD.	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.884
carD	rpoB	CLOTH_18960	CLOTH_18670	RNA polymerase-binding transcription factor CarD.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.869
carD	rpoC	CLOTH_18960	CLOTH_18660	RNA polymerase-binding transcription factor CarD.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.873
carD	rpoZ	CLOTH_18960	CLOTH_01840	RNA polymerase-binding transcription factor CarD.	DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.865
carD	sigA	CLOTH_18960	CLOTH_03350	RNA polymerase-binding transcription factor CarD.	RNA polymerase sigma factor SigA; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.	0.868
dnaG_1	sigA	CLOTH_03340	CLOTH_03350	DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.	RNA polymerase sigma factor SigA; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.	0.973
fur	rpoA	CLOTH_05650	CLOTH_18300	Ferric uptake regulation protein; Belongs to the Fur family.	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.795
fur	rpoB	CLOTH_05650	CLOTH_18670	Ferric uptake regulation protein; Belongs to the Fur family.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.752
fur	rpoC	CLOTH_05650	CLOTH_18660	Ferric uptake regulation protein; Belongs to the Fur family.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.697
fur	rpoZ	CLOTH_05650	CLOTH_01840	Ferric uptake regulation protein; Belongs to the Fur family.	DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.696
fur	sigA	CLOTH_05650	CLOTH_03350	Ferric uptake regulation protein; Belongs to the Fur family.	RNA polymerase sigma factor SigA; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.	0.778
kinE	rpoA	CLOTH_12130	CLOTH_18300	Sporulation kinase E.	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.766
kinE	rpoB	CLOTH_12130	CLOTH_18670	Sporulation kinase E.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.879
kinE	rpoC	CLOTH_12130	CLOTH_18660	Sporulation kinase E.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.765
kinE	rpoZ	CLOTH_12130	CLOTH_01840	Sporulation kinase E.	DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.754

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