Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
trmKtRNA (adenine(22)-N(1))-methyltransferase. (232 aa)    
Predicted Functional Partners:
OPJ57056.1
Putative GTP cyclohydrolase 1 type 2; Belongs to the GTP cyclohydrolase I type 2/NIF3 family.
  
 0.991
OPJ57287.1
Hypothetical protein; Belongs to the UPF0297 family.
  
     0.737
OPJ55630.1
Putative DNA-binding protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein.
  
     0.629
OPJ56898.1
Fibronectin-binding protein A FbpA.
 
     0.613
spoVB_2
Stage V sporulation protein B.
  
     0.598
OPJ56242.1
Metal-binding protein.
  
  
 0.582
dapH
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase; Catalyzes the transfer of an acetyl group from acetyl-CoA to tetrahydrodipicolinate.
  
    0.582
OPJ57054.1
Hypothetical protein.
       0.580
yigZ
IMPACT family member YigZ.
   
    0.574
whiA
Sporulation transcription regulator WhiA; Involved in cell division and chromosome segregation.
  
     0.540
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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