STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OPJ57153.1Hypothetical protein. (226 aa)    
Predicted Functional Partners:
nifJ
Pyruvate-flavodoxin oxidoreductase.
    
 0.943
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
  
 
 0.913
pyk
Pyruvate kinase; Belongs to the pyruvate kinase family.
  
 0.828
OPJ57154.1
Hypothetical protein.
       0.737
adhE
Aldehyde-alcohol dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
 
 0.661
puuB
Gamma-glutamylputrescine oxidoreductase.
   
 
 0.570
OPJ56949.1
Farnesyl diphosphate synthase; Belongs to the FPP/GGPP synthase family.
  
 
 0.502
asrA
Anaerobic sulfite reductase subunit A.
 
 
 0.486
acdA
acyl-CoA dehydrogenase.
  
 
 0.475
ldh
L-lactate dehydrogenase.
   
 
 0.471
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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