Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OPJ57155.1Hypothetical protein. (88 aa)    
Predicted Functional Partners:
hemH
Ferrochelatase.
  
     0.690
pyrK_1
Dihydroorotate dehydrogenase B, electron transfer subunit.
  
     0.667
OPJ54937.1
Hypothetical protein.
  
     0.651
OPJ56873.1
Hypothetical protein.
  
     0.606
rebO
Flavin-dependent L-tryptophan oxidase RebO precursor.
  
     0.580
OPJ55582.1
Hypothetical protein.
  
     0.566
OPJ56305.1
Hypothetical protein.
  
     0.551
apbE
Thiamine biosynthesis lipoprotein ApbE precursor; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein.
       0.550
trmFO
methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TrmFO.
  
     0.537
OPJ54642.1
Hypothetical protein.
  
     0.521
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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