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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xerD_2Tyrosine recombinase XerD; Belongs to the 'phage' integrase family. (307 aa)    
Predicted Functional Partners:
OPJ56937.1
Stage III sporulation protein SpoAB.
  
    0.667
OPJ56341.1
Hypothetical protein.
  
     0.656
nfo_2
Endonuclease 4.
  
     0.655
OPJ55070.1
Hypothetical protein.
  
     0.649
nifJ
Pyruvate-flavodoxin oxidoreductase.
    
  0.644
OPJ56941.1
Stage III sporulation protein SpoIIIAF.
  
    0.643
OPJ55938.1
Flagellin N-methylase.
  
     0.640
OPJ55169.1
Hypothetical protein.
  
     0.623
xerD_3
Tyrosine recombinase XerD; Belongs to the 'phage' integrase family.
  
     0.622
OPJ57281.1
Inner membrane protein.
  
     0.619
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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