Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
xerC_1Tyrosine recombinase XerC; Belongs to the 'phage' integrase family. (373 aa)    
Predicted Functional Partners:
OPJ55939.1
Hypothetical protein.
  
     0.734
prs_1
Ribose-phosphate pyrophosphokinase.
  
    0.728
OPJ55979.1
Hypothetical protein.
  
     0.705
nifJ
Pyruvate-flavodoxin oxidoreductase.
    
  0.672
OPJ54640.1
Hypothetical protein.
  
     0.668
OPJ55938.1
Flagellin N-methylase.
  
     0.566
oadG
Oxaloacetate decarboxylase gamma chain.
  
  
  0.557
whiA
Sporulation transcription regulator WhiA; Involved in cell division and chromosome segregation.
   
    0.555
OPJ57151.1
UvrD/REP helicase.
  
   
 0.550
OPJ56519.1
Hypothetical protein.
  
     0.525
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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