STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yneACell division suppressor protein YneA. (90 aa)    
Predicted Functional Partners:
yocH
Cell wall-binding protein YocH precursor.
  
  
 0.959
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
    
  0.868
pncC
Nicotinamide-nucleotide amidohydrolase PncC; Belongs to the CinA family.
    
  0.867
OPJ56213.1
Hypothetical protein.
   
   0.796
epsE
Type II secretion system protein E.
    
   0.775
epsF
Type II secretion system protein F.
    
   0.775
OPJ56334.1
Competence protein A.
    
   0.775
OPJ56335.1
Fimbrial assembly protein PilN.
    
   0.775
OPJ56336.1
Hypothetical protein.
    
   0.775
yaaH_1
Spore germination protein YaaH.
  
 
 0.691
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.