Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yneACell division suppressor protein YneA. (90 aa)    
Predicted Functional Partners:
yocH
Cell wall-binding protein YocH precursor.
  
  
 0.946
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
    
  0.875
thrZ_2
threonine--tRNA ligase 2.
     
  0.769
OPJ56213.1
Hypothetical protein.
   
   0.711
yaaH_1
Spore germination protein YaaH.
  
 
 0.707
OPJ56336.1
Hypothetical protein.
   
   0.690
epsE
Type II secretion system protein E.
    
   0.689
epsF
Type II secretion system protein F.
    
   0.689
OPJ56334.1
Competence protein A.
    
   0.689
OPJ56335.1
Fimbrial assembly protein PilN.
    
   0.689
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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