xerD_3 protein (Clostridium thermoalcaliphilum)

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Score

xerD_3

Tyrosine recombinase XerD; Belongs to the 'phage' integrase family. (339 aa)

Predicted Functional Partners:

nifJ

0.672

spoIIIE

0.628

xerD_2

0.622

prs_1

0.579

whiA

0.555

ftsK

0.506

topA

0.505

rpsO

0.500

OPJ57166.1

0.495

recR

0.491

Your Current Organism:

Clostridium thermoalcaliphilum

NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OPJ57166.1	xerD_3	CLOTH_04490	CLOTH_04500	Methionine gamma-lyase.	Tyrosine recombinase XerD; Belongs to the 'phage' integrase family.	0.495
ftsK	topA	CLOTH_14090	CLOTH_05850	DNA translocase FtsK; Belongs to the FtsK/SpoIIIE/SftA family.	DNA topoisomerase 1; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]	0.629
ftsK	xerD_3	CLOTH_14090	CLOTH_04500	DNA translocase FtsK; Belongs to the FtsK/SpoIIIE/SftA family.	Tyrosine recombinase XerD; Belongs to the 'phage' integrase family.	0.506
nifJ	recR	CLOTH_01250	CLOTH_19980	Pyruvate-flavodoxin oxidoreductase.	Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.	0.724
nifJ	topA	CLOTH_01250	CLOTH_05850	Pyruvate-flavodoxin oxidoreductase.	DNA topoisomerase 1; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]	0.950
nifJ	xerD_2	CLOTH_01250	CLOTH_04400	Pyruvate-flavodoxin oxidoreductase.	Tyrosine recombinase XerD; Belongs to the 'phage' integrase family.	0.672
nifJ	xerD_3	CLOTH_01250	CLOTH_04500	Pyruvate-flavodoxin oxidoreductase.	Tyrosine recombinase XerD; Belongs to the 'phage' integrase family.	0.672
prs_1	xerD_2	CLOTH_12360	CLOTH_04400	Ribose-phosphate pyrophosphokinase.	Tyrosine recombinase XerD; Belongs to the 'phage' integrase family.	0.579
prs_1	xerD_3	CLOTH_12360	CLOTH_04500	Ribose-phosphate pyrophosphokinase.	Tyrosine recombinase XerD; Belongs to the 'phage' integrase family.	0.579
recR	nifJ	CLOTH_19980	CLOTH_01250	Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.	Pyruvate-flavodoxin oxidoreductase.	0.724
recR	topA	CLOTH_19980	CLOTH_05850	Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.	DNA topoisomerase 1; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]	0.568
recR	xerD_3	CLOTH_19980	CLOTH_04500	Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.	Tyrosine recombinase XerD; Belongs to the 'phage' integrase family.	0.491
rpsO	spoIIIE	CLOTH_04220	CLOTH_04280	30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	DNA translocase SpoIIIE; Belongs to the FtsK/SpoIIIE/SftA family.	0.543
rpsO	topA	CLOTH_04220	CLOTH_05850	30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	DNA topoisomerase 1; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]	0.575
rpsO	xerD_2	CLOTH_04220	CLOTH_04400	30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	Tyrosine recombinase XerD; Belongs to the 'phage' integrase family.	0.424
rpsO	xerD_3	CLOTH_04220	CLOTH_04500	30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	Tyrosine recombinase XerD; Belongs to the 'phage' integrase family.	0.500
spoIIIE	rpsO	CLOTH_04280	CLOTH_04220	DNA translocase SpoIIIE; Belongs to the FtsK/SpoIIIE/SftA family.	30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.543
spoIIIE	topA	CLOTH_04280	CLOTH_05850	DNA translocase SpoIIIE; Belongs to the FtsK/SpoIIIE/SftA family.	DNA topoisomerase 1; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]	0.660
spoIIIE	xerD_3	CLOTH_04280	CLOTH_04500	DNA translocase SpoIIIE; Belongs to the FtsK/SpoIIIE/SftA family.	Tyrosine recombinase XerD; Belongs to the 'phage' integrase family.	0.628
topA	ftsK	CLOTH_05850	CLOTH_14090	DNA topoisomerase 1; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]	DNA translocase FtsK; Belongs to the FtsK/SpoIIIE/SftA family.	0.629