Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ybbH_1Putative HTH-type transcriptional regulator YbbH. (287 aa)    
Predicted Functional Partners:
glcB
PTS system glucoside-specific EIICBA component.
  
 
 0.938
ptsG
PTS system glucose-specific EIICBA component.
  
 
 0.938
nifJ
Pyruvate-flavodoxin oxidoreductase.
    
  0.877
korA_1
2-oxoglutarate oxidoreductase subunit KorA.
  
 
  0.739
korB_1
2-oxoglutarate oxidoreductase subunit KorB.
    
  0.737
porC_1
Pyruvate synthase subunit PorC.
    
  0.730
pspA_1
Phosphoserine phosphatase 1; Belongs to the phosphoglycerate mutase family.
    
  0.717
ndhI_1
NAD(P)H-quinone oxidoreductase subunit I.
       0.632
ecfT
Energy-coupling factor transporter transmembrane protein EcfT; Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 
    0.566
sacX_1
Negative regulator of SacY activity.
  
 
 0.546
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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