STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybbH_1Putative HTH-type transcriptional regulator YbbH. (287 aa)    
Predicted Functional Partners:
glcB
PTS system glucoside-specific EIICBA component.
  
 
 0.947
ptsG
PTS system glucose-specific EIICBA component.
  
 
 0.947
nifJ
Pyruvate-flavodoxin oxidoreductase.
  
 
  0.889
porC_1
Pyruvate synthase subunit PorC.
    
  0.730
pspA_1
Phosphoserine phosphatase 1; Belongs to the phosphoglycerate mutase family.
    
  0.720
korA_1
2-oxoglutarate oxidoreductase subunit KorA.
  
 
  0.718
korB_1
2-oxoglutarate oxidoreductase subunit KorB.
    
  0.717
ndhI_1
NAD(P)H-quinone oxidoreductase subunit I.
       0.646
sacX_1
Negative regulator of SacY activity.
  
 
 0.602
malX_1
PTS system maltose- and glucose-specific EIICB component.
  
 
 0.602
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.