Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OPJ57214.1Coat F domain protein. (151 aa)    
Predicted Functional Partners:
OPJ55397.1
Hypothetical protein.
  
     0.605
OPJ57215.1
Hypothetical protein.
       0.580
pyrK_1
Dihydroorotate dehydrogenase B, electron transfer subunit.
  
 
 
 0.531
OPJ57216.1
Hypothetical protein.
       0.461
nifJ
Pyruvate-flavodoxin oxidoreductase.
  
  
 0.448
copA
Copper-exporting P-type ATPase A.
       0.438
hndA_1
NADP-reducing hydrogenase subunit HndA.
  
  
 0.434
OPJ56827.1
Hypothetical protein.
  
     0.425
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.