Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OPJ57224.1Hypothetical protein. (65 aa)    
Predicted Functional Partners:
OPJ55397.1
Hypothetical protein.
  
     0.596
OPJ57225.1
Hypothetical protein.
       0.576
rsgI
anti-sigma-I factor RsgI.
  
     0.497
uvsE
UV DNA damage endonuclease.
  
     0.486
OPJ57226.1
Hypothetical protein.
       0.477
OPJ57228.1
Hypothetical protein.
 
     0.455
OPJ57067.1
Hypothetical protein.
  
     0.441
OPJ56513.1
Hypothetical protein.
  
     0.436
OPJ56815.1
Hypothetical protein.
  
     0.431
splB
Spore photoproduct lyase.
 
     0.423
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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