Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OPJ57244.1Hypothetical protein. (155 aa)    
Predicted Functional Partners:
ytrH
Sporulation membrane protein YtrH.
 
  
 0.972
OPJ55582.1
Hypothetical protein.
  
     0.756
OPJ55257.1
Hypothetical protein.
  
     0.738
OPJ55639.1
Hypothetical protein.
  
     0.719
OPJ57188.1
Hypothetical protein.
  
     0.698
OPJ57088.1
Flagellar biosynthesis chaperone.
  
     0.680
OPJ57256.1
Hypothetical protein.
  
     0.680
OPJ56046.1
FlgN protein.
  
     0.634
OPJ56041.1
Hypothetical protein.
  
     0.600
OPJ57089.1
Hypothetical protein.
  
     0.579
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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